cafferychen777/ChatSpatial
View on GitHub ↗MCP server for spatial transcriptomics analysis through natural language interfaces.
43 ★12 forksPythonUpdated 20d ago
What you need to know
MCP server for spatial transcriptomics analysis via natural language, exposing 20 schema-validated tools orchestrating 66 methods across 15 categories.
Install
pip install chatspatial or docker pull ghcr.io/cafferychen777/chatspatial:v1.3.0 (Python 3.11-3.14)
Key features
- ✓20 MCP tools orchestrating 66 spatial transcriptomics methods
- ✓Covers 10x Visium, Xenium, Slide-seq v2, MERFISH, seqFISH
- ✓Schema-enforced orchestration for reproducible workflows
- ✓Supports MCP 2026-07-28 with 2025-11-25 negotiation
- ✓stdio default; Streamable HTTP for configured deployments
Best for
Bioinformatics researchers doing spatial transcriptomics with AI assistance.
Platforms: Python · Docker
Reviewed 2026-08-11
Topics
agentic-aibioinformaticscell-communicationclaude-desktopcomputational-biologydeconvolutiongenomicsllm-agentmachine-learningmcp-servermodel-context-protocolpythonpytorchscanpysingle-cellspatial-analysisspatial-domainsspatial-transcriptomicssquidpyvisualization
- Stars
- 43★
- Forks
- 12
- Language
- Python
- License
- MIT
- Created
- 2025-05-06
- Last push
- 2026-08-15