bioinformatics
22 servers · 2,151★ total
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.
Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP.
239 evaluated academic Claude/agent skills across 17 research domains (bioinformatics, data science, clinical, social-science methods, Turkish academia & more). Executable eval per skill, deterministic citation verifier, research→write→review→publish pipeline, and a skill-finder front door. Claude Code, Cursor, Codex, Gemini CLI & Copilot.
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.
MCP server for spatial transcriptomics analysis through natural language interfaces.
A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
The BioContextAI Registry for biomedical MCP servers
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK
AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating drug discovery with Model Context Protocol (MCP) and FastMCP.
A comprehensive Model Context Protocol (MCP) server for accessing the SureChEMBL chemical patent database.
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.
BioMed MCP over AlphaFold DB + 8 public sources, with SQLite knowledge graph, offline mode, and explicit clinical-use limits.
Pinakes — a deterministic, verifiable data layer for AI agents across domains (biology + literature). Same query → byte-identical records, complete-or-fail-loudly, re-runnable provenance manifest + verify().
A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.
Plant genomics MCP server — 50 tools across 23 backends (Ensembl Plants, Phytozome, UniProt, AlphaFold DB, PDBe, InterPro, JASPAR, PANTHER, OrthoDB, AraGWAS, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR, …) + cross-source synthesis. stdio + Streamable-HTTP.
AI-agent-controllable desktop genome and transcriptome viewer. Native MCP server (43 tools) and embedded HTTP API let LLM assistants observe, drive, and analyse alongside the user. OpenGL rendering, 50+ built-in analyses, unified chromosome- and transcript-space (ribo-seq, direct RNA, long-read). Linux, Windows, macOS.